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A Historical Perspective on Cardiovascular Proteomics
Pages 1-14
This book fulfils the need to keep up with the high number of innovations in proteomics, and at the same time to warn the readers about the danger of manufacturers and scientists claims around new technologies. Mass spectrometry stands as the core technology in proteomics. The emerging field of targeted proteomics and its potential applications in the cardiovascular arena are also reviewed and discussed. A concluding section highilghts the promise of proteomics in the light of these recent developments.
As this technique and its applications have undergone remarkable advances in the past years, recent updates on proteomic applications are covered. Another key concept revealed by proteomic technologies is that the extent of protein post-translational modifications (PTMs) as well as their impact on the phenotype has been underestimated by pre-proteomics science. As such, part of the manual focuses on the emerging role of PTMs in basic cardiovascular sciences and in the clinics.
In fact, there is an emerging consensus that the detailed annotation of protein PTMs could lead to a more in-depth representation of biological systems, translating into more specific targets for therapy as well as biomarkers. Moreover, a recent trend is so-called “targeted proteomics”. The approach was awarded the title of “Method of the Year” by Nature in 2013 (see the editorial by Vivien Marx in 1st issue of Nature in Jan 2013). According to a few proteomic scientists the emphasis should not be placed on generating long lists of proteins but lists of proteins with a true biological meaning.
A Historical Perspective on Cardiovascular Proteomics
Pages 1-14
Basic Concepts in Mass Spectrometry and Protein Quantitation
Pages 15-32
How to Design a Cardiovascular Proteomics Experiment
Pages 33-57
Organelle, Protein and Peptide Fractionation in Cardiovascular Proteomics
Pages 59-104
Vascular Proteomics
Pages 105-122
Stem Cell Proteomics
Pages 123-153
Bottom-Up Proteomics
Pages 155-185
Top-Down Proteomics
Pages 187-212
Targeted Proteomics (MRM) in Cardiovascular Research
Pages 213-226
Label-Free Quantification by Data Independent Acquisition Mass Spectrometry to Map Cardiovascular Proteomes
Pages 227-245
Labeling and Label-Free Shotgun Proteomics Quantification in the Research of Cardiovascular Diseases
Pages 247-274
Analysis of Proteomic Data
Pages 275-292
Post-translational Modifications in the Cardiovascular Proteome
Pages 293-320
Proteomic Network Systems Analysis
Pages 321-342
Sensing and Remembering Cellular States Through Chromatin
Pages 343-363
Synergizing Proteomic and Metabolomic Data to Study Cardiovascular Systems
Pages 365-388
Clinical Cardiovascular Proteomics
Pages 389-414
Concluding Remarks: Proteomics AD 2025
Pages 415-426
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